| US 7,587,279 B2 | ||
| Method for quantitative PCR data analysis system (QDAS) | ||
| Xitong Li, Mountain View, Calif. (US); and Kenneth Stineman, San Jose, Calif. (US) | ||
| Assigned to Genomic Health, Redwood City, Calif. (US) | ||
| Filed on Jul. 06, 2004, as Appl. No. 10/886,501. | ||
| Prior Publication US 2006/0008809 A1, Jan. 12, 2006 | ||
| Int. Cl. G01N 33/48 (2006.01); C12P 19/34 (2006.01) | ||
| U.S. Cl. 702—17 [435/91.2] | 78 Claims |
| 1. A method of determining a classification of amplification data resulting from an amplification of nucleic acid molecules
in a sample, the method comprising:
receiving, at a computing system, the amplification data, wherein the amplification data is derived from a signal measured
from the sample at a plurality of time points, wherein the time points include numbers corresponding to cycles of a reaction
of the sample;
determining, with the computing system, a quality score of the amplification data, wherein the quality score is a maximum
of a group of one or more local quality values (LQVs), wherein an LQV is proportional to a slope of a respective window region
containing a plurality of the amplification data points;
determining a fractional cycle number (Ct) where a function approximating at least a portion of the amplification data intersects
a Ct threshold value;
generating, with the computing system, a status classification of the amplification data based on a numerical value of the
quality score and based on Ct;
determining a quality lower limit function (Qlimit) as a function of cycle number, wherein the Qlimit:
is a first constant value for cycle numbers less than a lower cycle number (CtL);
decreases from the first constant value to a second constant value, wherein the decrease occurs from CtL to a higher cycle
number (CtH); and
is the second constant value for cycles higher than the CtH value,
wherein generating the status classification includes identifying a distance between a point of {Ct, quality score} and Qlimit.
|